Stem-loop oan-mir-181b-1

Accession

MI0006686

Description

Ornithorhynchus anatinus oan-mir-181b-1 precursor miRNA

Gene family

MIPF0000007; mir-181

Sequence

112634 reads, 1510 reads per million, 5 experiments

ugcagaguuuaacaaaggucccaaugAACAUUCAUUGCUGUCGGUGGguuuaacucugaggacaagCUCACUGAACAAUGAAUGGAAcuguggcucaccuuaggcaacca
......(((((....((((.(((..(..(((((((((...(((((((((((..((....))..))))))))))).)))))))))...)..)))...))))))))).....

Structure

ugcaga     acaa    --c   au -AA         CUG           aa  c 
      guuua    aggu   cca  g   CAUUCAUUG   UCGGUGGguuu  cu u
      |||||    ||||   |||  |   |||||||||   |||||||||||  ||  
      cggau    ucca   ggu  c   GUAAGUAAC   AGUCACUCgaa  gg g
-accaa     ----    cuc   gu AAG         --A           ca  a 

Annotation confidence High

Genome context

4: 46540360-46540469 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oan-mir-181b-1

Mature oan-miR-181b-5p

• Accession: MIMAT0006835
• Description: Ornithorhynchus anatinus oan-miR-181b-5p mature miRNA
• Sequence: 27 - AACAUUCAUUGCUGUCGGUGG - 47
• Evidence: experimental ; Illumina [1]

Mature oan-miR-181b-1-3p

• Accession: MIMAT0006836
• Description: Ornithorhynchus anatinus oan-miR-181b-1-3p mature miRNA
• Sequence: 67 - CUCACUGAACAAUGAAUGGAA - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004