miRBase entry: oan-mir-122

Stem-loop oan-mir-122


Accession
MI0006679
Description
Ornithorhynchus anatinus oan-mir-122 precursor miRNA
Gene family
MIPF0000095; mir-122


Sequence

1230 reads, 30 reads per million, 5 experiments
aaccuuggauuguuugcuaccagagcugUGGAGUGUGACAAUGGUGUUUGuguccagucuaucAAACGCCAUUAUCACACUAaauagcuacuguagggccauccgucucuu
......((((.(((..((((.((((((((..(((((((.(((((((((((............))))))))))).)))))))..)))))).))))))))).)))).......

Structure
-aaccuu    u   ug    c  -      GG       C           ugucc 
       ggau guu  cuac ag agcugU  AGUGUGA AAUGGUGUUUG     a
       |||| |||  |||| || ||||||  ||||||| |||||||||||      
       ccua cgg  gaug uc ucgaua  UCACACU UUACCGCAAAc     g
uucucug    c   --    -  a      aA       A           uaucu 


Annotation confidence Not enough data
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Genome context
3: 28911020-28911130 [+]

Database links

Mature oan-miR-122-5p

Accession MIMAT0006825
Description Ornithorhynchus anatinus oan-miR-122-5p mature miRNA
Sequence 29 - UGGAGUGUGACAAUGGUGUUUG - 50
Evidence experimental
Illumina [1]

Mature oan-miR-122-3p

Accession MIMAT0006826
Description Ornithorhynchus anatinus oan-miR-122-3p mature miRNA
Sequence 64 - AAACGCCAUUAUCACACUA - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004