miRBase entry: oan-mir-365-1

Stem-loop oan-mir-365-1


Accession
MI0006677
Description
Ornithorhynchus anatinus oan-mir-365-1 precursor miRNA
Gene family
MIPF0000061; mir-365


Sequence

1848 reads, 39 reads per million, 5 experiments
gcagggaaaaugAGGGACUUUUGGGGGCAGAUGUGuuuccauugcacuaucaUAAUGCCCCUAAAAAUCCUUAUugcucuugc
((((((..((((((((..((((((((((((((((((.......)))).)))....))))))))))).))))))))..))))))

Structure
      aa        AC           ----   -    uu 
gcaggg  aaugAGGG  UUUUGGGGGCA    GAU GUGu  c
||||||  ||||||||  |||||||||||    ||| ||||  c
cguucu  uUAUUCCU  AAAAUCCCCGU    cua cacg  a
      cg        -A           AAUa   u    uu 


Annotation confidence High
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Genome context
2: 29916123-29916205 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-365-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-365-1-5p

Accession MIMAT0006822
Description Ornithorhynchus anatinus oan-miR-365-1-5p mature miRNA
Sequence 13 - AGGGACUUUUGGGGGCAGAUGUG - 35
Evidence experimental
Illumina [1]

Mature oan-miR-365-3p

Accession MIMAT0006823
Description Ornithorhynchus anatinus oan-miR-365-3p mature miRNA
Sequence 53 - UAAUGCCCCUAAAAAUCCUUAU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004