Stem-loop oan-mir-218-1

Accession

MI0006673

Description

Ornithorhynchus anatinus oan-mir-218-1 precursor miRNA

Gene family

MIPF0000026; mir-218

Sequence

12598 reads, 222 reads per million, 5 experiments

gcaguauugacgguuuagcgagauuuucugUUGUGCUUGAUCUAACCAUGUgguugcaagguaugaguaAAACAUGGUUCUGUCAAGCAccauggaaagucacgcagcuuucuacagc
((.(((..((.((((..(((.((((((((((.(((((((((..((((((((..((((.........)))).))))))))..))))))))).)))))))))).))))))).))))).))

Structure

  a   uu  c    ua   a          U         CU        gg    aag 
gc gua  ga gguu  gcg gauuuucugU GUGCUUGAU  AACCAUGU  uugc   g
|| |||  || ||||  ||| |||||||||| |||||||||  ||||||||  ||||   u
cg cau  cu ucga  cgc cugaaaggua cACGAACUG  UUGGUACA  Aaug   a
  a   --  u    --   a          c         UC        -A    agu 

Annotation confidence High

Genome context

18: 2674598-2674715 [+]

Mature oan-miR-218-5p

• Accession: MIMAT0006815
• Description: Ornithorhynchus anatinus oan-miR-218-5p mature miRNA
• Sequence: 31 - UUGUGCUUGAUCUAACCAUGU - 51
• Evidence: not_experimental

Mature oan-miR-218-3p

• Accession: MIMAT0006816
• Description: Ornithorhynchus anatinus oan-miR-218-3p mature miRNA
• Sequence: 70 - AAACAUGGUUCUGUCAAGCA - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004