miRBase entry: oan-mir-140

Stem-loop oan-mir-140


Accession
MI0006671
Description
Ornithorhynchus anatinus oan-mir-140 precursor miRNA
Gene family
MIPF0000085; mir-140


Sequence

214534 reads, 5305 reads per million, 5 experiments
uuugugucugugugugucucucucuguguccugcCAGUGGUUUUACCCUAUGGUagguuacgucaugcuguucUACCACAGGGUAGAACCACGGAcaggauaccgggacgcucucugcaucgg
...((((..(.(.(((((((.....((((((((((.(((((((((((((.(((((((.((.((...)))).))))))).))))))))))))))).)))))))).))))))).).).))))...

Structure
uuu    cu u u       ucucu        -  A             A       u  c  c 
   gugu  g g gugucuc     guguccug cC GUGGUUUUACCCU UGGUagg ua gu  
   ||||  | | |||||||     |||||||| || ||||||||||||| ||||||| || || a
   uacg  c c cgcaggg     cauaggac GG CACCAAGAUGGGA ACCAUcu gu cg  
ggc    -u u u       ----c        A  -             C       u  -  u 


Annotation confidence High
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Genome context
11: 4441983-4442105 [-]

Database links

Mature oan-miR-140-5p

Accession MIMAT0006812
Description Ornithorhynchus anatinus oan-miR-140-5p mature miRNA
Sequence 35 - CAGUGGUUUUACCCUAUGGU - 54
Evidence experimental
Illumina [1]

Mature oan-miR-140-3p

Accession MIMAT0006813
Description Ornithorhynchus anatinus oan-miR-140-3p mature miRNA
Sequence 74 - UACCACAGGGUAGAACCACGGA - 95
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004