miRBase entry: oan-mir-490

Stem-loop oan-mir-490


Accession
MI0006670
Description
Ornithorhynchus anatinus oan-mir-490 precursor miRNA
Gene family
MIPF0000229; mir-490


Sequence

282 reads, 9 reads per million, 4 experiments
gggagacuuggaaaguucacgguucgacgCCAUGGAUCUCCAGGUGGGUcaagguuagagacgcacCAACCUGGAGGACUCCAUGCUGUcgagcugaucacgagcaacagacgcaagagucccc
((((..((((....((((.((((((((((.(((((((((((((((.(((...(........)..))).)))))))))..)))))).)))))))))).....))))........))))..)))).

Structure
-    ga    ----gaaa    ----a          C      --         G   caa guu 
 ggga  cuug        guuc     cgguucgacg CAUGGA  UCUCCAGGU GGU   g   a
 ||||  ||||        ||||     |||||||||| ||||||  ||||||||| |||   |    
 cccu  gaac        cgag     gucgagcUGU GUACCU  GGAGGUCCA Cca   c   g
c    ga    gcagacaa    cacua          C      CA         A   -cg aga 


Annotation confidence High
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Genome context
10: 8756531-8756654 [+]

Database links

Mature oan-miR-490-5p

Accession MIMAT0006810
Description Ornithorhynchus anatinus oan-miR-490-5p mature miRNA
Sequence 30 - CCAUGGAUCUCCAGGUGGGU - 49
Evidence experimental
Illumina [1]

Mature oan-miR-490-3p

Accession MIMAT0006811
Description Ornithorhynchus anatinus oan-miR-490-3p mature miRNA
Sequence 67 - CAACCUGGAGGACUCCAUGCUGU - 89
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004