miRBase entry: oan-mir-29b-1

Stem-loop oan-mir-29b-1


Accession
MI0006669
Description
Ornithorhynchus anatinus oan-mir-29b-1 precursor miRNA
Gene family
MIPF0000009; mir-29


Sequence

7677 reads, 157 reads per million, 5 experiments
gagguagaccacgauuuuaaagcuccuucaggaagCUGGUUUCAUAUGGUGGUUUAGauuuaacuacugagugucUAGCACCAUUUGAAAUCAGUGUucuugguggagaacggcugcacuu
(((((((.((............((((.(((((((((((((((((.((((((.(..(.(((((.....))))).)..).)))))).)))))))))).))))))).))))...)))))).)))

Structure
   -    a  acgauuuuaaag    u       -          U      G UU G     a 
gag guag cc            cucc ucaggaa gCUGGUUUCA AUGGUG U  A auuua c
||| |||| ||            |||| ||||||| |||||||||| |||||| |  | ||||| u
uuc cguc gg            gagg gguucuU UGACUAAAGU UACCAC A  u ugagu a
   a    -  ---------caa    u       G          U      G Uc g     c 


Annotation confidence High
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Genome context
10: 5175427-5175547 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from oan-mir-29b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature oan-miR-29b-5p

Accession MIMAT0006808
Description Ornithorhynchus anatinus oan-miR-29b-5p mature miRNA
Sequence 36 - CUGGUUUCAUAUGGUGGUUUAG - 57
Evidence experimental
Illumina [1]

Mature oan-miR-29b-3p

Accession MIMAT0006809
Description Ornithorhynchus anatinus oan-miR-29b-3p mature miRNA
Sequence 76 - UAGCACCAUUUGAAAUCAGUGU - 97
Evidence not_experimental
Database links

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004