miRBase entry: oan-mir-129

Stem-loop oan-mir-129


Accession
MI0006665
Description
Ornithorhynchus anatinus oan-mir-129 precursor miRNA
Gene family
MIPF0000073; mir-129


Sequence

167089 reads, 1982 reads per million, 5 experiments
ggggagaggugucuccgucucccuuggauCUUUUUGCGGUCUGGGCUUGCuguuccucuaaucaguagucaggAAGCCCUUACCCCAAAAAGUaucugcgagagaccuggucggcagauguggucccc
(((((((((.....)).))))))).(((((((((((.(((..((((((.(((..(..((....))..).))).))))))..))).))))))).))))......((((..(((....)))..))))...

Structure
------ggggagaggugucuccgucucccuu    -       C   CU      G   uu cu  a 
                               ggau CUUUUUG GGU  GGGCUU Cug  c  cu a
                               |||| ||||||| |||  |||||| |||  |  ||  
                               ucua GAAAAAC CCA  CCCGAA gac  g  ga u
ccccugguguagacggcugguccagagagcg    U       C   UU      g   -u au  c 


Annotation confidence High
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Genome context
10: 3704100-3704227 [+]

Database links

Mature oan-miR-129-5p

Accession MIMAT0006801
Description Ornithorhynchus anatinus oan-miR-129-5p mature miRNA
Sequence 30 - CUUUUUGCGGUCUGGGCUUGC - 50
Evidence experimental
Illumina [1]

Mature oan-miR-129-3p

Accession MIMAT0006802
Description Ornithorhynchus anatinus oan-miR-129-3p mature miRNA
Sequence 74 - AAGCCCUUACCCCAAAAAGU - 93
Evidence experimental
Illumina [1]
Database links

References

  1. PubMed ID: 18463306
    Conservation of small RNA pathways in platypus
    "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
    "Genome Res (2008) 18:995-1004