Stem-loop sequence vvi-MIR535c

AccessionMI0006583 (change log)
Previous IDsvvi-MIR535d
DescriptionVitis vinifera miR535c stem-loop
Gene family MIPF0000136; MIR535
Literature search

3 open access papers mention vvi-MIR535c
(12 sentences)

Stem-loop 
   --ugua    cu     a   g            a  cu   u     cg 
5'       auug  ugaca cga agagagcacgcu gu  gca ucaug  a
         ||||  ||||| ||| |||||||||||| ||  ||| |||||  g
3'       uaac  acugu gcu ucucucgugcgg ca  ugu aguac  g
   cucuuc    au     c   g            a  ug   c     aa
Get sequence
Deep sequencing
1745317 reads, 1.16e+05 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Database links

Mature sequence vvi-miR535c

Accession MIMAT0005738
Previous IDsvvi-miR535d
Sequence

11 -  

ugacaacgagagagagcacgc

 - 31

Get sequence
Deep sequencing1745012 reads, 2 experiments
Evidence experimental; Array [2], Illumina [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).