Stem-loop sequence vvi-MIR399e

Accession

MI0006575 (change log)

Description

Vitis vinifera miR399e stem-loop

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention vvi-MIR399e
(11 sentences)

Stem-loop

   --gcauauuaca         a            ca  -    ua    caca  caa 
5'             gggcaaauu ucuuuuggcagg  gc cacu  gaga    gc   g
               ||||||||| ||||||||||||  || ||||  ||||    ||    
3'             cccguuuag aggaaaccgucu  cg guga  uucu    cg   c
   ucuucuuaacgg         -            cc  u    ug    --ua  uac 

Deep sequencing

131 reads, 0 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (12X; GCA_000003745.2): chr10: 2992220-2992331 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from vvi-MIR399e

• vvi-MIR399f: chr10: 2995807-2995913 [-]
• vvi-MIR399e: chr10: 2992220-2992331 [-]
• vvi-MIR399a: chr10: 2989450-2989546 [+]
• vvi-MIR399d: chr10: 2988021-2988125 [-]
• vvi-MIR399h: chr10: 2983545-2983634 [+]

Database links

• EntrezGene:MIR399E
• miRBase Tracker:MI0006575

Mature sequence vvi-miR399e

• Accession: MIMAT0005730
• Sequence: 82 - ugccaaaggagauuugcccgg - 102
• Deep sequencing: 131 reads, 2 experiments
• Evidence: by similarity; MI0002347

References

1. PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).