Stem-loop sequence vvi-MIR398a

AccessionMI0006572 (change log)
DescriptionVitis vinifera miR398a stem-loop
Gene family MIPF0000107; MIR398
Literature search

4 open access papers mention vvi-MIR398a
(9 sentences)

Stem-loop 
   --aca         a   gc            cg u           c  caa 
5'      ccccaaggg gug  accugagaacac  g uguguuggcug gc   g
        ||||||||| |||  ||||||||||||  | ||||||||||| ||    
3'      gggguuucc cac  uggacucuugug  u acguaaucgau cg   c
   accac         c   --            uu u           -  ucu
Get sequence
Deep sequencing
491 reads, 0 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr1: 731608-731710 [+]
intergenic
Database links

Mature sequence vvi-miR398a

Accession MIMAT0005727
Sequence

73 -  

uguguucucaggucaccccuu

 - 93

Get sequence
Deep sequencing384 reads, 2 experiments
Evidence experimental; Array [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).