Stem-loop sequence vvi-MIR395m

Accession

MI0006568 (change log)

Description

Vitis vinifera miR395m stem-loop

Gene family

MIPF0000016; MIR395

Literature search

6 open access papers mention vvi-MIR395m
(23 sentences)

Stem-loop

   --gucc  ua         ug         c      ccu  uc  g 
5'       cc  gaguucccu  aacacuuca ugggga   uc  ua u
         ||  |||||||||  ||||||||| ||||||   ||  ||  
3'       gg  cucaagggg  uugugaagu auccuu   ag  au u
   uaccgu  uc         gu         c      --c  ua  a 

Deep sequencing

7219 reads, 450 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (12X; GCA_000003745.2): chr1: 6557811-6557902 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from vvi-MIR395m

• vvi-MIR395j: chr1: 6553026-6553111 [+]
• vvi-MIR395m: chr1: 6557811-6557902 [+]
• vvi-MIR395l: chr1: 6559098-6559184 [+]
• vvi-MIR395i: chr1: 6562642-6562727 [+]
• vvi-MIR395h: chr1: 6566652-6566743 [+]

Database links

• EntrezGene:MIR395M
• miRBase Tracker:MI0006568

Mature sequence vvi-miR395m

• Accession: MIMAT0005723
• Sequence: 62 - cugaaguguuugggggaacuc - 82
• Deep sequencing: 7153 reads, 2 experiments
• Evidence: experimental; Array [2]

References

1. PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2. PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).