Stem-loop sequence vvi-MIR395g

AccessionMI0006562 (change log)
DescriptionVitis vinifera miR395g stem-loop
Gene family MIPF0000016; MIR395
Literature search

6 open access papers mention vvi-MIR395g
(23 sentences)

Stem-loop 
   -- u c  ua         ug         u       ccuua 
5'   g c cc  gaguucccc  agcacuuca uggggau     g
     | | ||  |||||||||  ||||||||| |||||||      
3'   c g gg  cucaagggg  uugugaagu auccuua     u
   ua u u  cc         gu         c       acuuu
Get sequence
Deep sequencing
7199 reads, 450 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr1: 6482113-6482198 [+]
intergenic
Clustered miRNAs
< 10kb from vvi-MIR395g
vvi-MIR395gchr1: 6482113-6482198 [+]
vvi-MIR395fchr1: 6489542-6489627 [+]
Database links

Mature sequence vvi-miR395g

Accession MIMAT0005717
Sequence

56 -  

cugaaguguuugggggaacuc

 - 76

Get sequence
Deep sequencing7152 reads, 2 experiments
Evidence experimental; Array [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).