Stem-loop sequence vvi-MIR393b

AccessionMI0006553 (change log)
DescriptionVitis vinifera miR393b stem-loop
Gene family MIPF0000083; MIR393
Literature search

4 open access papers mention vvi-MIR393b
(13 sentences)

Stem-loop 
   --        c            c    u     c   cu u 
5'   ggaggagg auccaaagggau gcau gaucc aaa  c c
     |||||||| |||||||||||| |||| ||||| |||  | c
3'   uuuccucc uagguuucccua cgua cuagg uuu  g a
   gg        u            u    -     -   cu u
Get sequence
Deep sequencing
61 reads, 0 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr13: 4265132-4265214 [+]
intergenic
Database links

Mature sequence vvi-miR393b

Accession MIMAT0005708
Sequence

11 -  

uccaaagggaucgcauugauc

 - 31

Get sequence
Deep sequencing9 reads, 2 experiments
Evidence experimental; Array [2], Illumina [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).