Stem-loop sequence vvi-MIR319f

AccessionMI0006550 (change log)
DescriptionVitis vinifera miR319f stem-loop
Gene family MIPF0000010; MIR159
Literature search

7 open access papers mention vvi-MIR319f
(24 sentences)

Stem-loop 
   -----     uuu   a                 cu      ug  uu      uu  a   g  g   ac        u  aa        aaug   au 
5'      agugg   aag gagcuuccuucagucca  caugga  gg  aggggu  gg uua cu ccg  ucauucau ca  cacaguag    gaa  g
        |||||   ||| |||||||||||||||||  ||||||  ||  ||||||  || ||| || |||  |||||||| ||  ||||||||    |||   
3'      ucauc   uuc cucgagggaagucaggu  gugucu  uc  uuccua  uu aau ga ggc  aguaagug gu  gugucauc    uuu  g
   uuuug     ---   c                 uc      gu  uu      cu  a   g  g   gu        u  aa        ---a   ga
Get sequence
Deep sequencing
2583 reads, 50 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr6: 9137255-9137447 [+]
intergenic
Database links

Mature sequence vvi-miR319f

Accession MIMAT0005705
Sequence

162 -  

uuggacugaagggagcucccu

 - 182

Get sequence
Deep sequencing389 reads, 2 experiments
Evidence experimental; Array [2], Illumina [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).