Stem-loop sequence vvi-MIR172a

AccessionMI0006544 (change log)
DescriptionVitis vinifera miR172a stem-loop
Gene family MIPF0000035; MIR172
Literature search

9 open access papers mention vvi-MIR172a
(35 sentences)

Stem-loop 
   --ua    - g   c                ucauccuugaaaaguuuggcagaga 
5'     uugc c aug agcaucaucaagauuc                         u
       |||| | ||| ||||||||||||||||                          
3'     aacg g uac ucguaguaguucuaag                         a
   aaca    c -   a                uguacguuuacgugccaccacuaca
Get sequence
Deep sequencing
1855 reads, 150 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr6: 17652412-17652521 [+]
intergenic
Database links

Mature sequence vvi-miR172a

Accession MIMAT0005699
Sequence

80 -  

ugaaucuugaugaugcuacau

 - 100

Get sequence
Deep sequencing1848 reads, 2 experiments
Evidence by similarity; MI0000215

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).