Stem-loop sequence vvi-MIR171c

AccessionMI0006538 (change log)
DescriptionVitis vinifera miR171c stem-loop
Gene family MIPF0000030; MIR171_1
Literature search

7 open access papers mention vvi-MIR171c
(23 sentences)

Stem-loop 
   u    ---u    g        ug         a     g   u     c  u 
5'  ggua    uacg gauauugg  cgguucaau agaaa cag gcucg aa c
    ||||    |||| ||||||||  ||||||||| ||||| ||| ||||| ||  
3'  ucgu    gugc cuauaacc  gccgaguua uuuuu guc ugagu uu u
   -    uacu    a        gu         g     g   u     -  u
Get sequence
Deep sequencing
1562 reads, 50 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr12: 5487747-5487849 [-]
intergenic
Database links

Mature sequence vvi-miR171c

Accession MIMAT0005693
Sequence

70 -  

ugauugagccgugccaauauc

 - 90

Get sequence
Deep sequencing1144 reads, 2 experiments
Evidence experimental; Array [2], Illumina [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).