Stem-loop sequence vvi-MIR171a

AccessionMI0006536 (change log)
DescriptionVitis vinifera miR171a stem-loop
Gene family MIPF0000030; MIR171_1
Literature search

6 open access papers mention vvi-MIR171a
(17 sentences)

Stem-loop 
   ug   gga             g            aacc    au    a 
5'   gug   agcgugauguugg acggcucaauca    aaag  cuca u
     |||   ||||||||||||| ||||||||||||    ||||  |||| g
3'   cau   uuguacuauaacc ugccgaguuagu    uuuc  gagu g
   --   aac             g            cuaa    cu    u
Get sequence
Deep sequencing
1162 reads, 50 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr14: 25491201-25491299 [-]
intergenic
Database links

Mature sequence vvi-miR171a

Accession MIMAT0005691
Sequence

68 -  

ugauugagccgugccaauauc

 - 88

Get sequence
Deep sequencing1146 reads, 2 experiments
Evidence experimental; Array [2], Illumina [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).