Stem-loop sequence vvi-MIR169k

AccessionMI0006529 (change log)
DescriptionVitis vinifera miR169k stem-loop
Gene family MIPF0000037; MIR169_2
Literature search

8 open access papers mention vvi-MIR169k
(15 sentences)

Stem-loop 
   --          u c         ug         aauucacauauagaguggaaugaggc 
5'   gagaguggag g agccaagga  acuugccgg                          a
     |||||||||| | |||||||||  |||||||||                           
3'   cucuugcuuu c ucgguuccu  uggacgguc                          a
   uu          c a         gu         ccugugguacccuucuccggccggag
Get sequence
Deep sequencing
5584 reads, 350 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr11: 16108539-16108660 [+]
intergenic
Clustered miRNAs
< 10kb from vvi-MIR169k
vvi-MIR169jchr11: 16101917-16102038 [+]
vvi-MIR169dchr11: 16106486-16106605 [+]
vvi-MIR169kchr11: 16108539-16108660 [+]
vvi-MIR169achr11: 16112972-16113095 [+]
Database links

Mature sequence vvi-miR169k

Accession MIMAT0005684
Sequence

13 -  

cagccaaggaugacuugccgg

 - 33

Get sequence
Deep sequencing5500 reads, 2 experiments
Evidence experimental; Array [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).