Stem-loop sequence vvi-MIR169e

AccessionMI0006525 (change log)
DescriptionVitis vinifera miR169e stem-loop
Gene family MIPF0000012; MIR169_1
Literature search

8 open access papers mention vvi-MIR169e
(17 sentences)

Stem-loop 
   ---    u  cu   -        a     u     --c    ucc   g     -  auuucuuucuuuuuuccaagu 
5'    gucu gu  gau agccaagg ugacu gccug   ccua   caa ugggu ca                     a
      |||| ||  ||| |||||||| ||||| |||||   ||||   ||| ||||| ||                      
3'    cgga ca  uua ucgguucc acuga cggac   gggu   guu gccua gu                     g
   ucu    -  uu   a        -     -     cuu    -uu   g     a  acuauauaguuuauaguuugu
Get sequence
Deep sequencing
4231 reads, 250 reads per million, 2 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr14: 25082717-25082865 [-]
intergenic
Database links

Mature sequence vvi-miR169e

Accession MIMAT0005680
Sequence

12 -  

uagccaaggaugacuugccugc

 - 33

Get sequence
Deep sequencing4012 reads, 2 experiments
Evidence experimental; Array [2], Illumina [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).