Stem-loop sequence vvi-MIR169d

Accession

MI0006524 (change log)

Description

Vitis vinifera miR169d stem-loop

Gene family

MIPF0000037; MIR169_2

Literature search

8 open access papers mention vvi-MIR169d
(15 sentences)

Stem-loop

   --    g     c       a ug         aa     -     -     aagagaaga   u 
5'   gagu gaaug agccaag a  auuugccgg  uuuau auaua gugag         ggc a
     |||| ||||| ||||||| |  |||||||||  ||||| ||||| |||||         ||| u
3'   cuua uuuac ucgguuc u  ugaacgguc  aagug uauau cacuu         ucg a
   cu    g     a       c gu         cc     a     a     ---------   g 

Deep sequencing

9238 reads, 600 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (12X; GCA_000003745.2): chr11: 16106486-16106605 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from vvi-MIR169d

• vvi-MIR169j: chr11: 16101917-16102038 [+]
• vvi-MIR169d: chr11: 16106486-16106605 [+]
• vvi-MIR169k: chr11: 16108539-16108660 [+]
• vvi-MIR169a: chr11: 16112972-16113095 [+]

Database links

• EntrezGene:MIR169D
• miRBase Tracker:MI0006524

Mature sequence vvi-miR169d

• Accession: MIMAT0005679
• Sequence: 11 - cagccaagaaugauuugccgg - 31
• Deep sequencing: 9121 reads, 2 experiments
• Evidence: by similarity; MI0002276

References

1. PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).