Stem-loop sequence vvi-MIR169a

AccessionMI0006521 (change log)
DescriptionVitis vinifera miR169a stem-loop
Gene family MIPF0000037; MIR169_2
Literature search

9 open access papers mention vvi-MIR169a
(22 sentences)

Stem-loop 
   --      g     c         ug         aa     -     -     aagagaaga   u 
5'   gagagu gaaug agccaagga  acuugccgg  uuuau auaua gugag         ggc a
     |||||| ||||| |||||||||  |||||||||  ||||| ||||| |||||         ||| u
3'   cucuua uuuac ucgguuccu  ugaacgguc  aagug uauau cacuu         ucg a
   uu      g     a         gu         cc     a     a     ---------   u
Get sequence
Deep sequencing
5602 reads, 350 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr11: 16112972-16113095 [+]
intergenic
Clustered miRNAs
< 10kb from vvi-MIR169a
vvi-MIR169dchr11: 16106486-16106605 [+]
vvi-MIR169kchr11: 16108539-16108660 [+]
vvi-MIR169achr11: 16112972-16113095 [+]
Database links

Mature sequence vvi-miR169a

Accession MIMAT0005676
Sequence

13 -  

cagccaaggaugacuugccgg

 - 33

Get sequence
Deep sequencing5501 reads, 2 experiments
Evidence experimental; Array [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).