Stem-loop sequence vvi-MIR167e

AccessionMI0006519 (change log)
DescriptionVitis vinifera miR167e stem-loop
Gene family MIPF0000023; MIR167_1
Literature search

7 open access papers mention vvi-MIR167e
(12 sentences)

Stem-loop 
   c    ---u   u           g        aaacuugcuucc     u 
5'  acua    cag ugaagcugcca caugaucu            cuuug g
    ||||    ||| ||||||||||| ||||||||            |||||  
3'  uggu    guc acuuugacggu guacuaga            gagac a
   -    uguu   c           -        ---------cua     a
Get sequence
Deep sequencing
987501 reads, 6.54e+04 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr5: 5845385-5845474 [+]
intergenic
Database links

Mature sequence vvi-miR167e

Accession MIMAT0005674
Sequence

11 -  

ugaagcugccagcaugaucua

 - 31

Get sequence
Deep sequencing984619 reads, 2 experiments
Evidence experimental; Array [2], Illumina [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).