Stem-loop sequence vvi-MIR167b

AccessionMI0006516 (change log)
DescriptionVitis vinifera miR167b stem-loop
Gene family MIPF0000023; MIR167_1
Literature search

7 open access papers mention vvi-MIR167b
(12 sentences)

Stem-loop 
   --  a      u           g         ag        uugccca 
5'   ca uagcag ugaagcugcca caugaucua  cuuuucug       c
     || |||||| ||||||||||| |||||||||  ||||||||        
3'   gu guuguc acuuugacggu guacuagau  gaaaggac       c
   ag  a      c           -         ca        cucuuuc
Get sequence
Deep sequencing
989593 reads, 6.56e+04 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr14: 7137388-7137486 [+]
intergenic
Database links

Mature sequence vvi-miR167b

Accession MIMAT0005671
Sequence

11 -  

ugaagcugccagcaugaucua

 - 31

Get sequence
Deep sequencing984616 reads, 2 experiments
Evidence experimental; Array [2], Illumina [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).