Stem-loop sequence vvi-MIR167a

AccessionMI0006515 (change log)
DescriptionVitis vinifera miR167a stem-loop
Gene family MIPF0000023; MIR167_1
Literature search

8 open access papers mention vvi-MIR167a
(16 sentences)

Stem-loop 
   --uu    a            c  c          g aacaaacaccaucucuuucuucucuaaccccaugucuggauucguccaccgauccauuauuauagaccaggccgcccguuucccauguagugaucgauaauuaggcucgggguuuucacuuuuuagugggaucuaaucc 
5'     ugag gguugaagcugc ag augaucuggu a                                                                                                                                           u
       |||| |||||||||||| || |||||||||| |                                                                                                                                            
3'     acuc cuaacuucgacg uc uacuggacua u                                                                                                                                           u
   acuc    a            u  -          g accuugggauagagauaccucaauccaaaaccuuaauccgauacuuaauaugggggagucgauuuaguuuuggggcaaucuuaauuuuaucuuuugucuggagugguacuauauaugguggguauguuuguagguagga
Get sequence
Deep sequencing
984702 reads, 6.54e+04 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr1: 1618504-1618854 [+]
intergenic
Database links

Mature sequence vvi-miR167a

Accession MIMAT0005670
Sequence

11 -  

ugaagcugccagcaugaucug

 - 31

Get sequence
Deep sequencing984529 reads, 2 experiments
Evidence experimental; Array [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).