Stem-loop sequence vvi-MIR166c

AccessionMI0006509 (change log)
DescriptionVitis vinifera miR166c stem-loop
Gene family MIPF0000004; MIR166
Literature search

8 open access papers mention vvi-MIR166c
(17 sentences)

Stem-loop 
   --cuauu   a        uu      cu   g      uaccuuaacuuugauccguuucucuagauccauaucaccua 
5'        uug ggggaaug  gucugg  cga gacacu                                         u
          ||| ||||||||  ||||||  ||| ||||||                                          
3'        aac ccccuuac  cggacc  gcu cugugg                                         a
   cgcuauu   c        uu      ag   g      uuguguacgagucauguuuauuuuuauguuauuauguauau
Get sequence
Deep sequencing
2314368 reads, 1.54e+05 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr15: 16978572-16978731 [-]
intergenic
Database links

Mature sequence vvi-miR166c

Accession MIMAT0005664
Sequence

129 -  

ucggaccaggcuucauucccc

 - 149

Get sequence
Deep sequencing2309947 reads, 2 experiments
Evidence experimental; Array [2], Illumina [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).