Stem-loop sequence vvi-MIR166a

AccessionMI0006507 (change log)
DescriptionVitis vinifera miR166a stem-loop
Gene family MIPF0000004; MIR166
Literature search

8 open access papers mention vvi-MIR166a
(18 sentences)

Stem-loop 
   -  -g      u             a   a     cuuccuuuuucuccauuaauuccuucagu      c    uuua 
5'  gc  gguguu ggaaugagguuug ucc agauc                             acuggu auga    g
    ||  |||||| ||||||||||||| ||| |||||                             |||||| ||||     
3'  cg  ccacag ccuuacuucggac agg ucuag                             uggcua uacu    u
   u  aa      u             c   c     ----------------------------u      a    ucau
Get sequence
Deep sequencing
2425794 reads, 1.62e+05 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr8: 3302797-3302926 [-]
intergenic
Database links

Mature sequence vvi-miR166a

Accession MIMAT0005662
Sequence

100 -  

ucggaccaggcuucauucc

 - 118

Get sequence
Deep sequencing2425774 reads, 2 experiments
Evidence experimental; Array [2], Illumina [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).