Stem-loop sequence vvi-MIR164c

AccessionMI0006505 (change log)
DescriptionVitis vinifera miR164c stem-loop
Gene family MIPF0000045; MIR164
Literature search

5 open access papers mention vvi-MIR164c
(15 sentences)

Stem-loop 
   ----uug      au    aagcagggcacgugcauuacuagcucaugc 
5'        agcaag  ggag                              a
          ||||||  ||||                              c
3'        ucguuc  ucuc                              c
   aguuucg      gu    agauugagcucguuuucuaauaaccaaaca
Get sequence
Deep sequencing
102876 reads, 6.75e+03 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr8: 10080460-10080556 [+]
intergenic
Database links

Mature sequence vvi-miR164c

Accession MIMAT0005660
Sequence

11 -  

uggagaagcagggcacgugca

 - 31

Get sequence
Deep sequencing102876 reads, 2 experiments
Evidence experimental; Array [2], Illumina [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).