Stem-loop sequence vvi-MIR164a

AccessionMI0006503 (change log)
DescriptionVitis vinifera miR164a stem-loop
Gene family MIPF0000045; MIR164
Literature search

6 open access papers mention vvi-MIR164a
(32 sentences)

Stem-loop 
   ---   u  u           ca          agauuugccucacuuuucccccuuuuuu 
5'    agc cc uguuggagaag  gggcacgugc                            c
      ||| || |||||||||||  ||||||||||                            u
3'    uug gg acaaccucuuc  cucgugcacg                            u
   ucc   -  u           cc          uucggacacccgccaccacccucauuuc
Get sequence
Deep sequencing
102863 reads, 6.75e+03 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr7: 3287470-3287590 [-]
intergenic
Database links

Mature sequence vvi-miR164a

Accession MIMAT0005658
Sequence

11 -  

uggagaagcagggcacgugca

 - 31

Get sequence
Deep sequencing102853 reads, 2 experiments
Evidence experimental; Array [2], Illumina [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).