Stem-loop sequence vvi-MIR156d

AccessionMI0006488 (change log)
DescriptionVitis vinifera miR156d stem-loop
Gene family MIPF0000008; MIR156
Literature search

12 open access papers mention vvi-MIR156d
(95 sentences)

Stem-loop 
   --agaga  ga         -     -       au  a    auuu     a 
5'        ga  cugacagaa gagag ugagcac  gc ggca    guaua g
          ||  ||||||||| ||||| |||||||  || ||||    |||||  
3'        cu  gacugucuu cucuc acucgug  ug ccgu    cauau g
   ucgugga  uc         u     c       cg  g    -auc     g
Get sequence
Deep sequencing
403037 reads, 2.66e+04 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr11: 7623217-7623319 [-]
intergenic
Database links

Mature sequence vvi-miR156d

Accession MIMAT0005643
Sequence

11 -  

ugacagaagagagugagcac

 - 30

Get sequence
Deep sequencing400376 reads, 2 experiments
Evidence experimental; Illumina [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).