Stem-loop sequence vvi-MIR156c

AccessionMI0006487 (change log)
DescriptionVitis vinifera miR156c stem-loop
Gene family MIPF0000008; MIR156
Literature search

11 open access papers mention vvi-MIR156c
(96 sentences)

Stem-loop 
   ---a    a           -             a  u   cug   uu     g 
5'     agga uaggugacaga agagagugagcac ca ggu   uuc  gcaug g
       |||| ||||||||||| ||||||||||||| || |||   |||  |||||  
3'     uccu gucuacugucu ucucucacucgug gu ucg   aag  cguac u
   ucuc    -           a             c  c   ---   uu     c
Get sequence
Deep sequencing
397925 reads, 2.63e+04 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr4: 848204-848307 [-]
intergenic
Database links

Mature sequence vvi-miR156c

Accession MIMAT0005642
Sequence

11 -  

ugacagaagagagugagcac

 - 30

Get sequence
Deep sequencing397908 reads, 2 experiments
Evidence experimental; Illumina [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).