Stem-loop bna-MIR167c

Accession

MI0006473

Description

Brassica napus bna-MIR167c precursor miRNA

Gene family

MIPF0000023; MIR167_1

Literature search

8 open access papers mention bna-MIR167c
(31 sentences)

Sequence

ggugcaccggcaucugaUGAAGCUGCCAGCAUGAUCUAguuaacuuuauuucuccguuguuuauccaugacaauggaaaagggauaagugucgauuagaucauguucguaguuucacccguugacugucgcauc
(((((..(((((.(.(.(((((((((.((((((((((((((.(((((((((((((((((((.......)))))))))...)))))))).)).)))))))))))))).))))))))).).).)).)))..)))))

Structure

     ac   -  u u a         C              a  -        ---         ua 
ggugc  cgg ca c g UGAAGCUGC AGCAUGAUCUAguu ac uuuauuuc   uccguuguu  u
|||||  ||| || | | ||||||||| |||||||||||||| || ||||||||   |||||||||  c
cuacg  guc gu g c acuuugaug uuguacuagauuag ug gaauaggg   agguaacag  c
     cu   a  u c c         c              c  u        aaa         ua 

Annotation confidence Not enough data

Genome context

EM:AC189327: 100866-100999 [+]

Mature bna-miR167c

• Accession: MIMAT0005628
• Description: Brassica napus bna-miR167c mature miRNA
• Sequence: 18 - UGAAGCUGCCAGCAUGAUCUA - 38
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17659282
   Cloning and characterization of microRNAs from Brassica napus
   "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
   "FEBS Lett (2007) 581:3848-3856


2. PubMed ID: 22138974
   Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
   "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
   "Plant Physiol (2012) 158:813-823