Stem-loop bna-MIR169j

Accession

MI0006466

Description

Brassica napus bna-MIR169j precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

11 open access papers mention bna-MIR169j
(42 sentences)

Sequence

guguuuagUAGCCAAGGAUGACUUGCCUGCucuuguucaccuccacgauucaacuuuauacguugaaggguuuuggauuauugugcauucaacauguauaauaauuugaaaucauguugaaucuuuguggguuagguuucaggcagucuccuuggcuauuuugacau
(((((.((((((((((((.((((.(((((..((((...((((.((.((((((((..............((((((((((((((((((((.....))))))))))))))))))))..))))))))..)).))))))))...)))))))))))))))))))))..)))))

Structure

     -u            U    U     -Cu    uuc    c  -c        uuuauacguugaag                    u 
guguu  agUAGCCAAGGA GACU GCCUG   cuug   accu ca  gauucaac              gguuuuggauuauugugcau c
|||||  |||||||||||| |||| |||||   ||||   |||| ||  ||||||||              |||||||||||||||||||| a
uacag  uuaucgguuccu cuga cggac   ggau   uggg gu  cuaaguug              cuaaaguuuaauaauaugua a
     uu            -    -     uuu    ---    u  uu        ------------ua                    c 

Annotation confidence Not enough data

Genome context

EM:AC189215: 121043-121209 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bna-MIR169j

Mature bna-miR169j

• Accession: MIMAT0005621
• Description: Brassica napus bna-miR169j mature miRNA
• Sequence: 9 - UAGCCAAGGAUGACUUGCCUGC - 30
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17659282
   Cloning and characterization of microRNAs from Brassica napus
   "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
   "FEBS Lett (2007) 581:3848-3856