miRBase entry: bna-MIR169g

Stem-loop bna-MIR169g


Accession
MI0006463
Description
Brassica napus bna-MIR169g precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
11 open access papers mention bna-MIR169g
(42 sentences)

Sequence

gagaaacggugacaugaagaaugagaaguuguguggUAGCCAAGGAUGACUUGCCUGCgucuuuaacaccauaucaaagacuuuaucgauagucucugaguugguuaggcuguaggcagucuccuuggcuauucagacacuccucuuucuccucauuucacauuucuc
((((((..((((.((((((((.(((.(((.((.(((((((((((((.((((.((((((((((.....((((..(((.(((((........))))).)))..)))).)))).)))))))))))))))))))).))).))))).))).))))..)))).)))).))))))

Structure
      cg    c    --    u   a   u  g   -          U    U      -    uuaac    ua   a     uua 
gagaaa  guga auga  agaa gag agu gu ugg UAGCCAAGGA GACU GCCUGC gucu     acca  uca agacu   u
||||||  |||| ||||  |||| ||| ||| || ||| |||||||||| |||| |||||| ||||     ||||  ||| |||||    
cucuuu  cacu uacu  ucuu cuc uca ca acu aucgguuccu cuga cggaug cgga     uggu  agu ucuga   c
      -a    u    cc    u   c   -  g   u          -    -      u    ----u    ug   c     uag 


Annotation confidence Not enough data
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Genome context
EM:BZ041682: 86-253 [+]

Database links

Mature bna-miR169g

Accession MIMAT0005618
Description Brassica napus bna-miR169g mature miRNA
Sequence 37 - UAGCCAAGGAUGACUUGCCUGC - 58
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17659282
    Cloning and characterization of microRNAs from Brassica napus
    "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
    "FEBS Lett (2007) 581:3848-3856