Stem-loop bna-MIR169f

Accession

MI0006462

Description

Brassica napus bna-MIR169f precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

11 open access papers mention bna-MIR169f
(45 sentences)

Sequence

gucaaagaugaauaggagaauucuauuuggUAGCCAAGGAUGACUUGCCUAcuucuuugcgaaggaaaauggucacggugucauguuugaaagugaauauauauuuauaagaguauaucaauuagugaccauuuugcguauaaaaagauauuaggcagucuccuuggcuauccuuauauguucuucuuucucaucucagac
(((..((((((..((((((((..(((..((((((((((((.((((.(((((..(((((.....(.(((((((((((....((((........))))..((((((((....))))))))......))))))))))).)......)))))...))))))))))))))))))).))..))).))))))))...))))))..)))

Structure

   aa      -au        uc   uu  -          U    U     -cu     -gcgaa g           ggugucauguuugaaagugaau        a 
guc  agauga   aggagaau  uau  gg UAGCCAAGGA GACU GCCUA   ucuuu      g aaaauggucac                      auauauuu u
|||  ||||||   ||||||||  |||  || |||||||||| |||| |||||   |||||      | |||||||||||                      ||||||||  
cag  ucuacu   ucuucuug  aua  cc aucgguuccu cuga cggau   agaaa      c uuuuaccagug                      uauaugag a
   ac      cuu        -u   uu  u          -    -     uau     aauaug g           ----------------auuaac        a 

Annotation confidence Not enough data

Genome context

EM:AC189215: 120667-120867 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bna-MIR169f

Mature bna-miR169f

• Accession: MIMAT0005617
• Description: Brassica napus bna-miR169f mature miRNA
• Sequence: 31 - UAGCCAAGGAUGACUUGCCUA - 51
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17659282
   Cloning and characterization of microRNAs from Brassica napus
   "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
   "FEBS Lett (2007) 581:3848-3856