Stem-loop bna-MIR169c

Accession

MI0006459

Description

Brassica napus bna-MIR169c precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

11 open access papers mention bna-MIR169c
(46 sentences)

Sequence

agaugaauagaagaaucauauuuggUAGCCAAGGAUGACUUGCCUAuuucuugagaguaaaaugggcauggugucauguuaaaaguuacuguagguaguuucaauuugaccauuuuccuuacaaaugauauuaggcagucuccuuggcuauccuuauauguucuucucucucaucu
((((((..(((((((.(((((..((((((((((((.((((.(((((..(((((.(((.((((((((((((....))))).....(..((((....))))..).......))))))).))).)))..))...))))))))))))))))))).))..))))))))))))...))))))

Structure

      -au       u     uu  -          U    U     -uu  --   a   u       ------------------------------     g 
agauga   agaagaa cauau  gg UAGCCAAGGA GACU GCCUA   uc  uug gag aaaaugg                              gcaug u
||||||   ||||||| |||||  || |||||||||| |||| |||||   ||  ||| ||| |||||||                              |||||  
ucuacu   ucuucuu guaua  cc aucgguuccu cuga cggau   ag  aac uuc uuuuacc                              uguac g
      cuc       -     uu  u          -    -     uau  ua   a   c       aguuuaacuuugauggaugucauugaaaau     u 

Annotation confidence Not enough data

Genome context

EM:ED535040: 841-1016 [-]

Mature bna-miR169c

• Accession: MIMAT0005614
• Description: Brassica napus bna-miR169c mature miRNA
• Sequence: 26 - UAGCCAAGGAUGACUUGCCUA - 46
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17659282
   Cloning and characterization of microRNAs from Brassica napus
   "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
   "FEBS Lett (2007) 581:3848-3856