Stem-loop bna-MIR171f

Accession

MI0006455

Description

Brassica napus bna-MIR171f precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

5 open access papers mention bna-MIR171f
(16 sentences)

Sequence

acgaaagaguccucuuugauauuggccugguucacucagaucuuccagauuacacacguacuauauacauucucucaguuaucUGAUUGAGCCGCGCCAAUAUCucagugcucucucgu
((((.(((((...((..(((((((((.(((((((.((((((((...(((.....................)))...))..)))))).))))))).)))))))))..)).))))).))))

Structure

    a     ccu  uu         c       c      --  ucc   uuacacacg 
acga agagu   cu  gauauuggc ugguuca ucagau  cu   aga         u
|||| |||||   ||  ||||||||| ||||||| ||||||  ||   |||         a
ugcu ucucg   ga  CUAUAACCG GCCGAGU AGUcua  ga   ucu         c
    c     --u  cu         C       U      uu  cuc   uacauauau 

Annotation confidence Not enough data

Genome context

EM:AC189627: 79418-79536 [+]

Mature bna-miR171f

• Accession: MIMAT0005610
• Description: Brassica napus bna-miR171f mature miRNA
• Sequence: 84 - UGAUUGAGCCGCGCCAAUAUC - 104
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17659282
   Cloning and characterization of microRNAs from Brassica napus
   "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
   "FEBS Lett (2007) 581:3848-3856


2. PubMed ID: 22138974
   Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
   "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
   "Plant Physiol (2012) 158:813-823