Stem-loop bna-MIR397b

Accession

MI0006446

Description

Brassica napus bna-MIR397b precursor miRNA

Gene family

MIPF0000120; MIR397

Literature search

4 open access papers mention bna-MIR397b
(4 sentences)

Sequence

gaacaUCAUUGAGUGCAGCGUUGAUGUgauuuacuuaucuuuuucauuguugaauggauuaaagcaauuuacaucaacguuggcucaauuauguuu
((((((.(((((((.((((((((((((((.((.(((((((..((((....)))).))))..))).)).))))))))))))))))))))).))))))

Structure

      C       G              u  a   --    uu    u 
gaacaU AUUGAGU CAGCGUUGAUGUga uu cuu  aucu  uuca u
|||||| ||||||| |||||||||||||| || |||  ||||  ||||  
uuugua uaacucg guugcaacuacauu aa gaa  uagg  aagu g
      u       -              u  c   au    -u    u 

Annotation confidence Not enough data

Genome context

EM:AC189186: 82670-82765 [-]

Mature bna-miR397b

• Accession: MIMAT0005601
• Description: Brassica napus bna-miR397b mature miRNA
• Sequence: 6 - UCAUUGAGUGCAGCGUUGAUGU - 27
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 17659282
   Cloning and characterization of microRNAs from Brassica napus
   "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
   "FEBS Lett (2007) 581:3848-3856


2. PubMed ID: 22138974
   Small RNA profiling in two Brassica napus cultivars identifies microRNAs with oil production- and development-correlated expression and new small RNA classes
   "Zhao YT, Wang M, Fu SX, Yang WC, Qi CK, Wang XJ"
   "Plant Physiol (2012) 158:813-823