Stem-loop sequence hsa-mir-1277

Accession

MI0006419 (change log)

Symbol

HGNC:MIR1277

Description

Homo sapiens miR-1277 stem-loop

Gene family

MIPF0001937; mir-1277

Literature search

8 open access papers mention hsa-mir-1277
(8 sentences)

Stem-loop

   --   uc     u            g        ug au 
5'   acc  ccaaa auauauauauau uacguaug  u  a
     |||  ||||| |||||||||||| ||||||||  |   
3'   ugg  gguuu uauguauauaua augcauau  a  u
   uu   gu     u            g        gu aa 

Deep sequencing

21660 reads, 41.6 reads per million, 149 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chrX: 118386394-118386471 [+]
• Overlapping transcripts:

  antisense

  OTTHUMT00000058023 ; RP4-555N2.3-001; intron 3

  ENST00000431706 ; AKAP17BP-001; intron 3

Database links

• EntrezGene:MIR1277
• HGNC:MIR1277
• RNAcentral:URS000075AF7D_9606
• miRBase Tracker:MI0006419

Mature sequence hsa-miR-1277-5p

• Accession: MIMAT0022724
• Sequence: 8 - aaauauauauauauauguacguau - 31
• Deep sequencing: 10737 reads, 142 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS0000427B68_9606
• Predicted targets:
  • TargetMiner:hsa-miR-1277-5p
  • TargetScanVert:hsa-miR-1277-5p
  • miRDB:hsa-miR-1277-5p

Mature sequence hsa-miR-1277-3p

• Accession: MIMAT0005933
• Previous IDs: hsa-miR-1277
• Sequence: 47 - uacguagauauauauguauuuu - 68
• Deep sequencing: 10881 reads, 136 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000044878A_9606
• Predicted targets:
  • TargetMiner:hsa-miR-1277-3p
  • TargetScanVert:hsa-miR-1277-3p
  • miRDB:hsa-miR-1277-3p
  • microrna.org:hsa-miR-1277-3p

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).