Stem-loop sequence hsa-mir-1245a

Accession

MI0006380 (change log)

Previous IDs

hsa-mir-1245

Symbol

HGNC:MIR1245A

Description

Homo sapiens miR-1245a stem-loop

Gene family

MIPF0000620; mir-1245

Literature search

4 open access papers mention hsa-mir-1245a
(45 sentences)

Stem-loop

   a       a               uc   --u  u 
5'  uuuaugu uaggccuuuagauca  uga   gu g
    ||||||| |||||||||||||||  |||   || a
3'  aaauaua auccggaaaucuagu  auu   ca a
   -       c               ga   ucu  u 

Deep sequencing

207 reads, 0 reads per million, 74 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr2: 188978092-188978161 [+]
• Overlapping transcripts:

  antisense

  OTTHUMT00000334695 ; AC068718.1-001; intron 2

  ENST00000434418 ; LINC01090-001; intron 2

Clustered miRNAs

< 10kb from hsa-mir-1245a

• hsa-mir-1245a: chr2: 188978092-188978161 [+]
• hsa-mir-1245b: chr2: 188978093-188978161 [-]

Database links

• EntrezGene:MIR1245
• HGNC:MIR1245A
• RNAcentral:URS000075F01A_9606
• miRBase Tracker:MI0006380

Mature sequence hsa-miR-1245a

• Accession: MIMAT0005897
• Previous IDs: hsa-miR-1245
• Sequence: 45 - aagugaucuaaaggccuacau - 65
• Deep sequencing: 127 reads, 52 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS000075D2F5_9606
• Predicted targets:
  • TargetMiner:hsa-miR-1245a
  • TargetScanVert:hsa-miR-1245a
  • miRDB:hsa-miR-1245a
  • microrna.org:hsa-miR-1245a

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).