miRBase entry: rno-mir-146b

Stem-loop rno-mir-146b


Accession
MI0006342
Description
Rattus norvegicus rno-mir-146b precursor miRNA
Gene family
MIPF0000103; mir-146

Literature search
50 open access papers mention rno-mir-146b
(206 sentences)

Sequence

407917 reads, 4162 reads per million, 503 experiments
uggccaccuggcccUGAGAACUGAAUUCCAUAGGCUGUgaacucuagcagaugcCCUAGGGACUCAGUUCUGGUGccuggcugugcua
((((((((.(((((..((((((((.((((.((((((((........))))....)))))))).)))))))))).))).)).)).))))

Structure
    -  -  u   -  UG        A    A    ----    gaa 
uggc ca cc ggc cc  AGAACUGA UUCC UAGG    CUGU   c
|||| || || ||| ||  |||||||| |||| ||||    ||||    
aucg gu gg ccG GG  UCUUGACU AGGG AUCC    gacg   u
    u  c  u   U  --        C    -    cgua    auc 


Annotation confidence High
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Genome context
chr1: 266089488-266089575 [+]

Database links

Mature rno-miR-146b-5p

Accession MIMAT0005595
Description Rattus norvegicus rno-miR-146b-5p mature miRNA
Sequence 15 - UGAGAACUGAAUUCCAUAGGCUGU - 38
Evidence experimental
cloned [1], SOLiD [2]

Mature rno-miR-146b-3p

Accession MIMAT0017334
Description Rattus norvegicus rno-miR-146b-3p mature miRNA
Sequence 55 - CCUAGGGACUCAGUUCUGGUG - 75
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  2. PubMed ID: 17805466
    Cloning and identification of novel microRNAs from rat hippocampus
    "He X, Zhang Q, Liu Y, Pan X"
    "Acta Biochim Biophys Sin (Shanghai) (2007) 39:708-714