Stem-loop sequence hsa-mir-1236

Accession

MI0006326 (change log)

Symbol

HGNC:MIR1236

Description

Homo sapiens miR-1236 stem-loop

Gene family

MIPF0000689; mir-1236

Literature search

15 open access papers mention hsa-mir-1236
(187 sentences)

Stem-loop

   -- u   u    -      au    auggacuggaagugggcagcauggagcu 
5'   g gag gaca ggggaa  gggg                            g
     | ||| |||| ||||||  ||||                             
3'   c cuc cugu ccccuu  cucc                            a
   ga -   u    u      --    guaauacaaccgguucgguacuacuucc 

Deep sequencing

75 reads, 0 reads per million, 39 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr6: 31956839-31956940 [-]
• Overlapping transcripts:

  antisense

  OTTHUMT00000076364 ; C4A-001; intron 9

  OTTHUMT00000356896 ; C4A-013; intron 9

  ENST00000428956 ; C4A-001; intron 9

  ENST00000498271 ; C4A-013; intron 9

Database links

• EntrezGene:MIR1236
• HGNC:MIR1236
• miRBase Tracker:MI0006326

Mature sequence hsa-miR-1236-5p

• Accession: MIMAT0022945
• Sequence: 2 - ugagugacaggggaaaugggga - 23
• Deep sequencing: 45 reads, 17 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetScanVert:hsa-miR-1236-5p
  • miRDB:hsa-miR-1236-5p

Mature sequence hsa-miR-1236-3p

• Accession: MIMAT0005591
• Previous IDs: hsa-miR-1236
• Sequence: 81 - ccucuuccccuugucucuccag - 102
• Deep sequencing: 19 reads, 19 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetScanVert:hsa-miR-1236-3p
  • miRDB:hsa-miR-1236-3p
  • microrna.org:hsa-miR-1236-3p

References

1. PMID:17964270 "Mammalian mirtron genes" Berezikov E, Chung WJ, Willis J, Cuppen E, Lai EC Mol Cell. 28:328-336(2007).