Stem-loop sequence hsa-mir-1226

Accession

MI0006313 (change log)

Symbol

HGNC:MIR1226

Description

Homo sapiens miR-1226 stem-loop

Gene family

MIPF0000444; mir-1226

Literature search

5 open access papers mention hsa-mir-1226
(32 sentences)

Stem-loop

   gug    c       c    a      a   ----g  a 
5'    aggg augcagg cugg uggggc gcu     gg u
      |||| ||||||| |||| |||||| |||     || g
3'    uccc ugugucc gacc acuccg ugg     cc g
   -ga    u       c    -      g   gaaaa  u 

Deep sequencing

1445 reads, 5.41 reads per million, 74 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr3: 47849555-47849629 [+]
• Overlapping transcripts:

  sense

  OTTHUMT00000346136 ; DHX30-004; intron 2

  OTTHUMT00000257495 ; DHX30-001; intron 2

  OTTHUMT00000346140 ; DHX30-008; intron 2

  OTTHUMT00000346143 ; DHX30-011; intron 2

  OTTHUMT00000346142 ; DHX30-010; intron 2

  OTTHUMT00000346135 ; DHX30-003; intron 2

  OTTHUMT00000346134 ; DHX30-002; intron 2

  OTTHUMT00000346137 ; DHX30-005; intron 2

  ENST00000472718 ; DHX30-004; intron 2

  ENST00000445061 ; DHX30-001; intron 2

  ENST00000476446 ; DHX30-008; intron 2

  ENST00000415400 ; DHX30-011; intron 2

  ENST00000492893 ; DHX30-010; intron 2

  ENST00000395745 ; DHX30-003; intron 2

  ENST00000441384 ; DHX30-002; intron 2

  ENST00000348968 ; DHX30-005; intron 2

  ENST00000446256 ; DHX30-201; intron 2

Database links

• EntrezGene:MIR1226
• HGNC:MIR1226
• RNAcentral:URS000064B9B1_9606
• miRBase Tracker:MI0006313

Mature sequence hsa-miR-1226-5p

• Accession: MIMAT0005576
• Previous IDs: hsa-miR-1226*
• Sequence: 1 - gugagggcaugcaggccuggaugggg - 26
• Deep sequencing: 236 reads, 32 experiments
• Evidence: experimental; cloned [1]
• Predicted targets:
  • TargetMiner:hsa-miR-1226-5p
  • TargetScanVert:hsa-miR-1226-5p
  • miRDB:hsa-miR-1226-5p
  • microrna.org:hsa-miR-1226-5p

Mature sequence hsa-miR-1226-3p

• Accession: MIMAT0005577
• Previous IDs: hsa-miR-1226
• Sequence: 54 - ucaccagcccuguguucccuag - 75
• Deep sequencing: 951 reads, 66 experiments
• Evidence: experimental; cloned [1]
• Database links:
  • RNAcentral:URS00002971AB_9606
• Predicted targets:
  • TargetMiner:hsa-miR-1226-3p
  • TargetScanVert:hsa-miR-1226-3p
  • miRDB:hsa-miR-1226-3p
  • microrna.org:hsa-miR-1226-3p

References

1. PMID:17964270 "Mammalian mirtron genes" Berezikov E, Chung WJ, Willis J, Cuppen E, Lai EC Mol Cell. 28:328-336(2007).