miRBase entry: mmu-mir-1199

Stem-loop mmu-mir-1199


Accession
MI0006307
Symbol
MGI: Mir1199
Description
Mus musculus mmu-mir-1199 precursor miRNA
Gene family
MIPF0001659; mir-1199

Literature search
3 open access papers mention mmu-mir-1199
(16 sentences)

Sequence

663 reads, 14 reads per million, 42 experiments
agccugcgccggagccggggUCUGAGUCCCGGUCGCGCGGgcgaggaacucauugaguugcgcgUGCGGCCGGUGCUCAGUCGGCccggcuccgguacuccgcugccgcgcgcccugga
..((.((((((((((((((..((((((.(((((((((((.(((....((((...))))))).))))))))))).))))))....))))))))))).....(((....))))))...)).

Structure
ag  --u   ---------------           --gU      C           G   agga    a 
  cc   gcg               ccggagccggg    CUGAGU CCGGUCGCGCG gcg    acuc  
  ||   |||               |||||||||||    |||||| ||||||||||| |||    |||| u
  gg   cgc               ggccucggccC    GACUCG GGCCGGCGUgc cgu    ugag  
-a  ucc   gcgccgucgccucau           GGCU      U           g   ----    u 


Annotation confidence High
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Genome context
chr8: 84011515-84011633 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mmu-mir-1199
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-1199-5p

Accession MIMAT0005860
Description Mus musculus mmu-miR-1199-5p mature miRNA
Sequence 21 - UCUGAGUCCCGGUCGCGCGG - 40
Evidence experimental
454 [1], Illumina [2]
Database links
Predicted targets

Mature mmu-miR-1199-3p

Accession MIMAT0017333
Description Mus musculus mmu-miR-1199-3p mature miRNA
Sequence 65 - UGCGGCCGGUGCUCAGUCGGC - 85
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  2. PubMed ID: 17989215
    RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
    "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
    "Proc Natl Acad Sci U S A (2007) 104:18097-18102