Stem-loop mmu-mir-1197

Accession

MI0006305

Symbol

MGI: Mir1197

Description

Mus musculus mmu-mir-1197 precursor miRNA

Gene family

MIPF0000126; mir-379

Sequence

738 reads, 23 reads per million, 45 experiments

gugagcuggaaucagccagcguuaccucaagguauuugaagaugCGGUUGACCAUGGUGUGUACGcuuuauuuaugacgUAGGACACAUGGUCUACUUCUucucaauaucacaucucgcc
(((((((((......))))).)))).....((((((.(((((...(((.(((((((.(((.(((((.........).))))..)))))))))).))))))))..))))))..........

Structure

gugagcuggaaucagccagcguuaccucaa      -u     ugC   U       G   -G    - uuu 
                              gguauu  gaaga   GGU GACCAUG UGU  UACG c   a
                              ||||||  |||||   ||| ||||||| |||  |||| |   u
                              cuauaa  cuUCU   UCA CUGGUAC ACA  AUgc g   u
--------------------ccgcucuaca      cu     ---   U       -   GG    a uau 

Annotation confidence High

Genome context

chr12: 109712317-109712436 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from mmu-mir-1197

Mature mmu-miR-1197-5p

• Accession: MIMAT0017331
• Description: Mus musculus mmu-miR-1197-5p mature miRNA
• Sequence: 45 - CGGUUGACCAUGGUGUGUACG - 65
• Evidence: experimental ; Illumina [3]

Mature mmu-miR-1197-3p

• Accession: MIMAT0005858
• Description: Mus musculus mmu-miR-1197-3p mature miRNA
• Sequence: 80 - UAGGACACAUGGUCUACUUCU - 100
• Evidence: experimental ; 454 [1], Illumina [2-3]

References

1. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


2. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009


3. PubMed ID: 17989215
   RNA sequence analysis defines Dicer's role in mouse embryonic stem cells
   "Calabrese JM, Seila AC, Yeo GW, Sharp PA"
   "Proc Natl Acad Sci U S A (2007) 104:18097-18102