Stem-loop sequence mmu-mir-466k

Accession

MI0006292 (change log)

Symbol

MGI:Mir466k

Description

Mus musculus miR-466k stem-loop

Gene family

MIPF0000208; mir-466

Literature search

22 open access papers mention mmu-mir-466k
(59 sentences)

Stem-loop

   auau   ug  ug      ug              --      ag    ug           u 
5'     aug  ug  ugugug  uguguguacaugua  caugug  uaug  uguguauaugu u
       |||  ||  ||||||  ||||||||||||||  ||||||  ||||  |||||||||||  
3'     ugu  ac  guacgu  guauauguguauau  guguau  gugu  guacguguaca g
   ----   gu  gu      gu              aa      ga    gu           u 

Deep sequencing

5526 reads, 3.44e+03 reads per million, 153 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr3: 85467377-85467498 [+]
• Overlapping transcripts:

  antisense

  OTTMUST00000081442 ; Arfip1-004; intron 3

  ENSMUST00000154148 ; Arfip1-004; intron 3

Database links

• EntrezGene:Mir466k
• MGI:Mir466k
• RNAcentral:URS00007B1A88_10090
• miRBase Tracker:MI0006292

Mature sequence mmu-miR-466k

• Accession: MIMAT0005845
• Sequence: 20 - uguguguguacauguacauguga - 42
• Deep sequencing: 2737 reads, 127 experiments
• Evidence: experimental; 454 [1], Illumina [2]
• Database links:
  • RNAcentral:URS000030640D_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-466k
  • miRDB:mmu-miR-466k
  • microrna.org:mmu-miR-466k

References

1. PMID:17989215 "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells" Calabrese JM, Seila AC, Yeo GW, Sharp PA Proc Natl Acad Sci U S A. 104:18097-18102(2007).
2. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).