Stem-loop sequence mmu-mir-466f-4

Accession

MI0006291 (change log)

Symbol

MGI:Mir466f-4

Description

Mus musculus miR-466f-4 stem-loop

Gene family

MIPF0000208; mir-466

Literature search

28 open access papers mention mmu-mir-466f-4
(67 sentences)

Stem-loop

   -------   cu    cugu   uc   ----     u       ug        ug   -  gu 
5'        cau  gcau    gug  uac    gugug gugcaug  caugugug  uau cu  a
          |||  ||||    |||  |||    ||||| |||||||  ||||||||  ||| ||  u
3'        gua  ugug    cau  gug    uauau uacgugu  guacguac  gug ga  g
   uauacgu   ag    uguu   cu   uguc     c       gu        gu   u  gu 

Deep sequencing

2710 reads, 648 reads per million, 94 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr13: 71107089-71107209 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:Mir466f-4
• MGI:Mir466f-4
• RNAcentral:URS000078CC6E_10090
• miRBase Tracker:MI0006291

Mature sequence mmu-miR-466f

• Accession: MIMAT0005844
• Sequence: 20 - acgugugugugcaugugcaugu - 41
• Deep sequencing: 2614 reads, 88 experiments
• Evidence: experimental; 454 [1], Illumina [2]
• Database links:
  • RNAcentral:URS0000481390_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-466f
  • miRDB:mmu-miR-466f
  • microrna.org:mmu-miR-466f

References

1. PMID:17989215 "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells" Calabrese JM, Seila AC, Yeo GW, Sharp PA Proc Natl Acad Sci U S A. 104:18097-18102(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).