Stem-loop sequence mmu-mir-669h

Accession

MI0006289 (change log)

Symbol

MGI:Mir669h

Description

Mus musculus miR-669h stem-loop

Gene family

MIPF0000316; mir-467

Literature search

11 open access papers mention mmu-mir-669h
(15 sentences)

Stem-loop

   -----------------------     ugcccaccaaaaaua      g      aguuga            uuc 
5'                        uguga               ugcaug guguau      gugcauauucau   u
                          |||||               |||||| ||||||      ||||||||||||    
3'                        acacu               acguac cacaua      uacguauaagua   c
   cuauuugcucacaguaaggacac     --cacacacacacac      a      ------            uau 

Deep sequencing

3045 reads, 7.95e+03 reads per million, 152 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr2: 10518155-10518279 [+]
• Overlapping transcripts:

  sense

  OTTMUST00000026263 ; Sfmbt2-001; intron 10

  ENSMUST00000041105 ; Sfmbt2-001; intron 10

  ENSMUST00000116594 ; Sfmbt2-201; intron 11

Clustered miRNAs

< 10kb from mmu-mir-669h

• mmu-mir-297c: chr2: 10509016-10509113 [+]
• mmu-mir-669c: chr2: 10509296-10509404 [+]
• mmu-mir-669a-2: chr2: 10510164-10510260 [+]
• mmu-mir-297b: chr2: 10511667-10511775 [+]
• mmu-mir-466d: chr2: 10511967-10512062 [+]
• mmu-mir-669m-1: chr2: 10512790-10512887 [+]
• mmu-mir-669m-2: chr2: 10513434-10513531 [+]
• mmu-mir-466n: chr2: 10513741-10513834 [+]
• mmu-mir-669o: chr2: 10514300-10514395 [+]
• mmu-mir-466g: chr2: 10514595-10514674 [+]
• mmu-mir-466h: chr2: 10514891-10514971 [+]
• mmu-mir-297a-3: chr2: 10515820-10515921 [+]
• mmu-mir-466l: chr2: 10516097-10516217 [+]
• mmu-mir-297a-4: chr2: 10517067-10517164 [+]
• mmu-mir-669i: chr2: 10517604-10517730 [+]
• mmu-mir-669h: chr2: 10518155-10518279 [+]

Database links

• EntrezGene:Mir669h
• MGI:Mir669h
• RNAcentral:URS000075DC1C_10090
• miRBase Tracker:MI0006289

Mature sequence mmu-miR-669h-5p

• Accession: MIMAT0005841
• Sequence: 20 - augcauggguguauaguugagugc - 43
• Deep sequencing: 937 reads, 70 experiments
• Evidence: experimental; 454 [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS00004845C2_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-669h-5p
  • miRDB:mmu-miR-669h-5p
  • microrna.org:mmu-miR-669h-5p

Mature sequence mmu-miR-669h-3p

• Accession: MIMAT0005842
• Sequence: 65 - uaugcauauacacacaugcaca - 86
• Deep sequencing: 455 reads, 79 experiments
• Evidence: experimental; 454 [1], Illumina [2-3]
• Database links:
  • RNAcentral:URS0000316C5C_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-669h-3p
  • miRDB:mmu-miR-669h-3p
  • microrna.org:mmu-miR-669h-3p

References

1. PMID:17989215 "RNA sequence analysis defines Dicer's role in mouse embryonic stem cells" Calabrese JM, Seila AC, Yeo GW, Sharp PA Proc Natl Acad Sci U S A. 104:18097-18102(2007).
2. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
3. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).