miRBase entry: aga-mir-1174

Stem-loop aga-mir-1174


Accession
MI0006237
Description
Anopheles gambiae aga-mir-1174 precursor miRNA

Literature search
3 open access papers mention aga-mir-1174
(11 sentences)

Sequence

gcuacgaucguggguauuuuagaucaucgacagaccaaggcacuuucgucacuggcauuguaaggccgagcagaugcggccucaacccaaacccucacccgugguucgcaucugcucccguccagugcccuguccaaccauacugUCAGAUCUACUUCAUACCCAUGaaugguggcg
(((((.(((((((((((..((((((...(((((.....(((......)))...(((((((...((..((((((((((((((.....................)).))))))))))))))...))))))).............))))).))))))....))))))))).)).))))).

Structure
-     g  -         --uu      auc     accaaggcacuuucgucacu       uaa  cc            -  ucaacccaa 
 gcuac au cguggguau    uagauc   gacag                    ggcauug   gg  gagcagaugcgg cc         a
 ||||| || |||||||||    ||||||   |||||                    |||||||   ||  |||||||||||| ||         c
 cggug ua GUACCCAUA    AUCUAG   CUguc                    ccgugac   cc  cucgucuacgcu gg         c
g     g  a         CUUC      --A     -------auaccaaccuguc       cug  --            u  ugcccacuc 


Annotation confidence Not enough data
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Genome context
chr2R: 9129499-9129675 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from aga-mir-1174
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aga-miR-1174

Accession MIMAT0005524
Description Anopheles gambiae aga-miR-1174 mature miRNA
Sequence 146 - UCAGAUCUACUUCAUACCCAUG - 167
Evidence experimental
cloned [1]

References

  1. PubMed ID: 17933784
    Anopheles gambiae miRNAs as actors of defence reaction against Plasmodium invasion
    "Winter F, Edaye S, Huttenhofer A, Brunel C"
    "Nucleic Acids Res (2007) 35:6953-6962