Stem-loop sequence tae-MIR1136

Accession

MI0006198 (change log)

Description

Triticum aestivum miR1136 stem-loop

Gene family

MIPF0000382; MIR1122

Literature search

11 open access papers mention tae-MIR1136
(17 sentences)

Stem-loop

                c                  u          c    ugua 
5' uacucccuccguu cgaauuacuugucgcagg auggauguau uaga    u
   ||||||||||||| |||||||||||||||||| |||||||||| ||||    u
3' augagggaggcaa guuuaaugagcagcgucu uaccuacaua aucu    u
                a                  u          a    ugau 

Deep sequencing

144312 reads, 267 reads per million, 116 experiments

Confidence

Annotation confidence: low

Feedback: Do you believe this miRNA is real?

Comments

Yao et al. misname this sequence miR520 in [1]. miR1136 is unrelated to mammalian miR-520;

Genome context

Coordinates	Overlapping transcripts
6A: 4711016-4711122 [+]	intergenic
7D: 221246135-221246241 [-]	intergenic

Database links

• miRBase Tracker:MI0006198

Mature sequence tae-miR1136

• Accession: MIMAT0005371
• Sequence: 23 - uugucgcagguauggauguaucua - 46
• Deep sequencing: 35726 reads, 116 experiments
• Evidence: experimental; cloned [1]

References

1. PMID:17543110 "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)" Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q Genome Biol. 8:R96(2007).